Modeling of clastogenic activity and molecular docking at the binding sites of hif-1Α-dna by 3-arylcoumarins
Keywords:
factor inducido por hipoxia-1; 3-arilcumarinas; clastogenicidad; acoplamiento molecularAbstract
This study investigated the potential of 3-arylcoumarins to induce DNA damage and disrupt the interaction between the hypoxia-inducible factor-1α (HIF-1α) and ARNT, with the aim of
hindering heterodimer formation. The clastogenic potential of 33 coumarins was assessed using ModesLab 2.0 program, and their binding affinity to HIF-1α:ARNT was modeled with MOE 2019.01 software. The results revealed that 14 of the evaluated coumarins exhibited clastogenic potential, with structural classification modeled from 10 series related to the substitution pattern. To summarize, the presence of methoxy and nitro groups in the new 3-arylcoumarins Anti-HIF-1 structure is directly linked to its ability to induce high clastogenicity. Additionally, all these compounds exhibited a full capacity for DNA binding.
References
LERDA, D.; GARGANTINI, P. “Cáncer de pulmón y arsénico”. Revista Methodo. 2022,
(4), 329-338. https://doi.org/10.22529/me.2022.7(4)08
SEMENZA, G.L. “Defining the role of hypoxia-inducible factor 1 in cáncer biology and
therapeutics”. Oncogene. 2010, 29(5), 625-634. doi: 10.1038/onc.2009.441.
SEMENZA, G.L. “Oxygen sensing, homeostasis, and disease”. The New England Journal
of Medicine. 2011, 365(6), 537-547. doi: 10.1056/NEJMra1011165.
KAELIN, W.G.; RATCLIFFE, P.J.; SEMENZA, G.L. “Pathways for Oxygen Regulation
and Homeostasis”. Journal of the American Medical Association. 2016, 316(12), 1252–
doi:10.1001/jama.2016.12386
HU, Y.; LIU, J.; HUANG, H. “Recent agents targeting HIF-1α for cáncer therapy”.
Journal of Cellular Biochemistry. 2013, 114(3), 498–509. doi:10.1002/jcb.24390
WILKINS, S.E.; ABBOUD, M.I.; HANCOCK, R.L.; SCHOFIELD, C.J. “Targeting
Protein-Protein Interactions in the HIF System”. ChemMedChem. 2016, 11(8), 773–
doi:10.1002/cmdc.201600012
SEMENZA, G.L. “The hypoxic tumor microenvironment: A driving forcé forbreast
cáncer progression”. Biochimica et Biophysica Acta. 2016, 1863(3), 382-391. doi:
1016/j.bbamcr.2015.05.036.
ZHANG, H.; QIAN, D.Z.; TAN, Y.S.; LEE, K.; GAO, P.; REN, Y.R.; REY, S.;
HAMMERS, H.; CHANG, D.; PILI, R.; DANG, C.V.; LIU, J.O.; SEMENZA,
G.L. “Digoxin and other cardiac glycosides inhibit HIF-1synthesis and block tumor
growth”. Proceedings of the National Academy of Sciences. 2008, 105(50), 19579–
doi:10.1073/pnas.0809763105
RODRÍGUEZ-MORALES, I.;VALDÉS, Y.C., PROVEYER-DERICH, S. “Citostáticos:
medicamentos riesgosos”. Revista Cubana de Medicina. 2004, 43(2-3).
http://scielo.sld.cu/scielo.php?script=sci_arttext&pid=S0034-5232004000200009&lng=es.
ISHIDATE, M. JR.; HARNOIS, M.C., SOFUNI, T. “A comparative analysis of data on
the clastogenicity of 951 chemical substances tested in mammalian cell cultures”.
Mutation Research/ Reviews in GeneticToxicology. 1988, 195(2), 151-213. doi:
1016/0165-1110(88)90023-1.
ROSALES-RIMACHE, J.A.; MALCA-NANCY, E.; ALARCÓN-JHONATAN, J.;
CHÁVEZ, M.; GONZÁLES, M.A. “Daño genotóxico en trabajadores de minería
artesanal expuestos al mercurio”. Revista Peruana de Medicina Experimental y Salud
Pública. 2013, 30(4): 595-600. http://www.scielo.org.pe/scielo.php?script=sci_arttext&
pid=S1726-46342013000400009&lng=es.
MATHEUS-LOBO T.; BOLAÑOS, A. ¨Micronúcleos: biomarcador de genotoxicidad en
expuestos a plaguicidas”. Salus. 2014, 18(2), 18-26. http://ve.scielo.org/scielo.php?script=
sci_arttext&pid=S131671382014000200005&lng=es. ISSN 1316-7138.
GONZÁLES-DÍAZ, H.; GIA, O.; URIARTE, E.; HERNÁDEZ, I.; RAMOS, R.;
CHAVIANO, M.; SEIJO, S.; CASTILLO, J.A.; MORALES, L.; SANTANA, L.;
AKPALOO, D.; MOLINA, E.; CRUZ M.; TORRES, L.A.; CABRERA,
M.A. “Markovian chemicals in silico design (MARCH-INSIDE), a promising approach
for computer-aided molecular design I: discovery of anticáncer compounds”. Journal of
Molecular Modeling. 2003, 9(6), 395–407. doi:10.1007/s00894-003-0148-7
ESTRADA, E; MOLINA, E. “Automatic extraction of structural alerts for predicting
chromosome aberrations of organic compounds”. Journal of Molecular Graphics and
Modelling. 2006, 25(3), 275–288. doi: 10.1016/j.jmgm.2006.01.002.
GUARDADO-YORDI, E.; MOLINA-PÉREZ, E.; MATOS M.J.; URIARTE-VILLARES,
E. “StructuralAlerts for Predicting Clastogenic Activity of Pro-oxidant Flavonoid
Compounds: Quantitative Structure–Activity Relationship Study”. Journal of
Biomolecular Screening. 2012, 17(2), 216–224. doi:10.1177/1087057111421623
GUARDADO-YORDI, E.; MATOS, M.J.; PÉREZ-MARTÍNEZ, A.; TORNES, C.;
SANTANA, L.; MOLINA-PÉREZ, E.; URIARTE, E. “In silico genotoxicity of coumarins: application of Phenol-Explorer Food data base to functional Food science”.
Food&Function. 2017, 8(8), 2958-2966. doi:10.1039/C7FO00402H.
GUARDADO-YORDI, E.; MATOS, M. J.; SANTANA, L.; URIARTE E.; ABREU, O. y
MOLINA-PÉREZ, E. “Natural coumarins: QSTR approaches regarding their
genotoxicity”. Journal of Biological and Chemical Research. 2015, 2015, 241-257.
doi:10.3390/ecsoc-21-04821
VANGONE, A.; SPINELLI, R.; SCARANO, V.; CAVALLO, L.; OLIVA, R.
“COCOMAPS: a web applicationtoanalyze and visualizecontacts at the interface of
biomolecular complexes”. Bioinformatics. 2011, 27(20), 2915–2916. doi:
1093/bioinformatics/btr484.
KORTEMME, T.; BAKER, D. A. “Simple physical model for binding energy hot spots in
protein-protein. complexes”. Proceedings of the National Academy of Sciences of the
United States of America. 2002, 99(22), 14116-14121. doi: 10.1073/pnas.202485799.
KORTEMME, T.; KIM, D.E.; BAKER, D. “Computational alanine scanning of protein-
protein interfaces”. Science's signal transduction knowledge environment. 2004,
(219), pl2. doi: 10.1126/stke.2192004pl2.
MOLINA, E.; CASTAÑEDO, N.; URIARTE, E.; PATLEWICS, G.; HERNÁNDEZ, M.
“Estudio de la actividad clastogénica en compuestos orgánicos a partir del uso de una
herramienta bioinformática: alertas estructurales y posibles mecanismos de acción”.
Revista Cubana de Química. 2005, XVII(2), 199. ISSN: 2224-5421.
SINGH, S.K.; DAS, A. “The n → π* interaction: a rapidly emerging non-covalent
interaction”. PhysicalChemistry Chemical Physics. 2015, 17(15), 9596-9612.
doi:10.1039/C4CP05536E
WANG, T.; PENG, T.; WEN, X.; WANG, G.; SUN, Y.; LIU, S.; ZHANG, S.; WANG, L.
“Design, Synthesis and Preliminary Biological Evaluation of Benzyl-sulfone Coumarin
Derivatives as Anti-Cancer Agents”. Molecules. 2019, 24, 4034. doi:
3390/molecules24224034
MOLINA-PÉREZ, E.; CASTAÑEDO-CANCIO, N.; URIARTE-VILLARES, E. “Síntesis
de nuevas benzofurocumarinas con acción antitumoral”. Revista Cubana de Química.
, XVII(3), 180-186. https://www.redalyc.org/articulo.oa?id=443543687071
BONARDI, A.; FALSINI, M.; CATARZI, D.; VARANO, F.; DI CESARE MANNELLI,
L.; TENCI, B.; GHELARDINI, C.; ANGELI, A.; SUPURAN, C.T.; COLOTTA, V.
“Structural investigations on coumarins leading to chromeno[4,3-c]pyrazol-4-ones and
pyrano[4,3-c]pyrazol-4-ones: New scaffolds for the design of the tumor-associated
carbonican hydrase isoforms IX and XII”. European Journal of Medicinal Chemistry.
, 146, 47-59. doi:10.1016/j.ejmech.2018.01.033
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2024 Oscar Guillermo Collado-García, Liyoesmin Salinas-Rojas, Humberto J. Morris-Quevedo, Hans De Winter, Enrique Molina-Pérez
This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
This journal provides immediate open access to its content, based on the principle that offering the public free access to research helps a greater global exchange of knowledge. Each author is responsible for the content of each of their articles.